CVG Journal Club

The CVG Journal Club holds discussions of current articles drawn from broad, interdisciplinary topics which describe useful approaches, tools, and resources in genomics. Graduate students and post-docs in CVG labs will choose the topics/articles and lead the discussion. All CVG members and lab members are encouraged to attend. Meetings will be once per month, informal (and even fun!!), with snacks and drinks provided.

Organizers 2016-2017: John Schimenti, Tina Tran, and Roman Spektor

Upcoming Schedule

DATE TOPIC LOCATION
May 25, 2017
/ 4:30-5:30pm
Presenter: Sangjo Kang (Tumbar Lab)
Petruk, S et al. (2017). “Delayed accumulation of H3K27me3 on nascent DNA is essential for recruitment of transcription factors at early stages of stem cell differentiation”. Molecular Cell 66(2): 247-2 link
Racker Room, G01 Biotech

Recent Presentations

DATE TOPIC
Apr 27, 2017
/ 4:30-5:30pm
Presenter: Roman Spektor (Soloway Lab)
Minoux, M. et al.​ (2017). "Gene bivalency at Polycomb domains regulates cranial neural crest positional identity".Science 355(6332​). doi: 10.1126/science.aal2913​ link
Mar 30, 2017
/ 4:30-5:30pm
Presenter: Brooke Marks
Xu et al. (2017). "Landscape of monoallelic DNA accessibility in mouse embryonic stem cells and neural progenitor cells" Nature Genetics 49:377-386. doi:10.1038/ng.3769 link
Feb 23, 2017
/ 4:30-5:30pm
Presenter: Jiayi Xu (Cassano Lab)
Liu et al. (2017) "CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells" Science 355(39). DOI: 10.1126/science.aah7111 link
Jan 26, 2017
/ 4:30-5:30pm
Presenter: Nate Tippens (Lis/Yu Labs)
Rafiee, Mahmoud-Reza, et al. "Expanding the circuitry of pluripotency by selective isolation of chromatin-associated proteins." Molecular Cell 64.3 (2016): 624-635. link
Nov 17, 2016
/ 4:30-5:30pm
Presenter: Sunny Moon (White Lab)
Guernet, Alexis, et al. "CRISPR-Barcoding for Intratumor Genetic Heterogeneity Modeling and Functional Analysis of Oncogenic Driver Mutations." Molecular cell 63.3 (2016): 526-538. link
Oct 27, 2016
/ 4:30-5:30pm
Presenter: Jennie Sims (Smolka Lab)
Canela, A. et al. (2016) "DNA breaks and end resection measured genome-wide by End Sequencing" Molec. Cell 63: 898-911
Sep 29, 2016
/ 4:30-5:30pm
Presenter: Joel Tripp
“Microglia development follows a stepwise program to regulate brain homeostasis” Matcovitch-Natan, O et al., Science (2016) doi: 10.1126/science.aad8670 link
May 26, 2016
/ 4:30-5:30pm
Presenter: Peter Schweitzer (Genomics Core Facility)
Understanding factors involved in Illumina sequencing: the unvarnished truth of Illumina sequencing technologies and platforms.
Apr 28, 2016
/ 4:30-5:30pm
Presenter: Ezen Choo
“Ancient transposable elements transformed the uterine regulatory landscape and transcriptome during the evolution of mammalian pregnancy”Lynch, VJ et al., Cell Reports 10(4): 551-561 (2015) link
"Transposable elements and their KRAP-ZFP controllers regulate gene expression in adult tissues." Ecco, G et al. Developmental Cell 36(6): 611-623 (2016) link

Past Presentations